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Cottages in San Juan Island

Our top choices for San Juan Island cottages

Waterfront Beach House close to everything!

10.0 out of 10, Exceptional, (227)
"Proximity to the ferry was excellent. Great view of the water and Mt. Baker. Nice home and property. We had a great time."
Waterfront Beach House close to everything!

Lovely water and garden views. Two minutes drive to beaches, six to either town!

10.0 out of 10, Exceptional, (51)
"Nice location, views and Juanita/Marty took care of all of our needs."
Lovely water and garden views. Two minutes drive to beaches, six to either town!

Waterfront cottage with tidelands, creek and waterfall!

10.0 out of 10, Exceptional, (11)
"Beautiful setting, lots of amenities in the house. "
The price is SAR 1,857
SAR 3,225 total
includes taxes & fees
25 Sep - 26 Sep
Waterfront cottage with tidelands, creek and waterfall!

Sunset Beach Haven; Seriously Waterfront-"It's Like Living on a Boat", Whidbey

10.0 out of 10, Exceptional, (217)
"Julie and Peter’s place is the perfect get away! Close to many local attractions to keep you entertained but beautiful and quiet for a cozy stay in. Truly paradise."
Sunset Beach Haven; Seriously Waterfront-"It's Like Living on a Boat", Whidbey

Cottage by the Sea Su

9.6 out of 10, Exceptional, (144)
"Great location that accepts pets. Gorgeous view that never gets old!"
The price is SAR 600
SAR 1,008 total
includes taxes & fees
6 Oct - 7 Oct
Cottage by the Sea Su

A Charming And Artistic Cottage Set In a Beautiful Garden

9.8 out of 10, Exceptional, (187)
"Nice quiet place hardens are beautiful"
A Charming And Artistic Cottage Set In a Beautiful Garden

Sandy Beachfront, Hot Tub, Pet-Friendly, Kayaking

Sandy Beachfront, Hot Tub, Pet-Friendly, Kayaking

Cottage-in-the-Barn on Dragonfly Farm

10.0 out of 10, Exceptional, (142)
"Sweet, little cottage with a lovely view of the garden. Wonderful for sleeping in, reading books and watching birds. The hummingbirds are not messing around. This was a good size for a family of three. Our dog loved the onsite walk to the pond and short path around the barn. "
Cottage-in-the-Barn on Dragonfly Farm

Kick Back & Watch the Day Cruise By at Cornet Bay

9.6 out of 10, Exceptional, (45)
"Good location, plenty of room and quite area"
Kick Back & Watch the Day Cruise By at Cornet Bay

@ Marbella Lane - Seas the Bay Sanctuary

3.0 star property
The price is SAR 765
SAR 1,807 total
includes taxes & fees
7 Sep - 8 Sep
@ Marbella Lane - Seas the Bay Sanctuary

Cute, Cozy & Comfortable Cottage Conveniently Located In The Heart Of Town.

10.0 out of 10, Exceptional, (92)
"We enjoyed our weekend stay and would rent this place again."
Cute, Cozy & Comfortable Cottage Conveniently Located In The Heart Of Town.

Orcas Island, Marina View #201

9.6 out of 10, Exceptional, (95)
"Very private, relaxing homey property. "
Orcas Island, Marina View #201

Swan Lake Cottage by Avantstay Views + Firepit

3.0 star property
Swan Lake Cottage by Avantstay Views + Firepit

San Juan Island, Songbird Retreat #197

10.0 out of 10, Exceptional, (24)
"everything was beautiful. everything you would want in a cosy home away from home. nestled in the trees and so very quiet a short distance from friday harbor"
San Juan Island, Songbird Retreat #197

Cozy cottage, outdoor space & convenient location

9.2 out of 10, Wonderful, (56)
"Wonderful overall. Property was perfect for my family of 4 for a long weekend in and around Anacortes. Very walkable location. Kitchen, bath, beds, side yard were great. "
The price is SAR 401
SAR 1,390 total
includes taxes & fees
13 Sep - 14 Sep
Cozy cottage, outdoor space & convenient location

Water View, Impeccable Studio Cottage overlooking East Sound, Walk to Town, Close to Everything!

10.0 out of 10, Exceptional, (18)
"Absolutely loved staying at this property. Close to shops and restaurants, but very quiet and away from noise. Would stay there again. "
Water View, Impeccable Studio Cottage overlooking East Sound, Walk to Town, Close to Everything!

Bramble Seaview Cottage (Entire Property) with Sparkly Water View in Eastsound

9.8 out of 10, Exceptional, (71)
"We had a very lovely stay at this house. It is a five minute walk to the middle of Eastsound village. The house is in brand new condition and elegantly finished and furnished. The beds are very comfortable and the kitchen is well stocked with everything we expected. Overall, a great place to stay "
Bramble Seaview Cottage (Entire Property) with Sparkly Water View in Eastsound

San Juan Island, Captains Cottage #101

10.0 out of 10, Exceptional, (71)
"The Captain’s Cottage is a delight! Beautifully built, terrific location and spotless. Our favorite rental ever on the island."
San Juan Island, Captains Cottage #101

Oak Harbor Hideaway - 5 Mi to Deception Pass!

3.0 star property
Oak Harbor Hideaway - 5 Mi to Deception Pass!

🌹Cutest Garden Cottage🌹Lopez Village-Walk to Beach, Dining, Brewery, Farm Mkt

2.0 star property
10.0 out of 10, Exceptional, (3)
"Great location"
🌹Cutest Garden Cottage🌹Lopez Village-Walk to Beach, Dining, Brewery, Farm Mkt
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Top San Juan Island Hotel Reviews

Frequently asked questions

Why book your cottage in San Juan Island with Expedia?
Expedia has some excellent cottages in San Juan Island, so get ready for a memorable vacay close to nature. If you have a set budget, select how much you're willing to spend and the star rating of your property. Or, use our filters to search for cottages with a hot tub or free WiFi. We'll help you find the perfect place whatever your plans or style of travel.
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