An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

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Our top choices for Mission Bay hotels

1. The Dana on Mission Bay

The Dana on Mission Bay
3.5 star property
Mission Bay
9.0 out of 10, Wonderful, (4,448 reviews)
"Awesome location by the Bay Firefly restaurant was excellent staff and food"
Canada
Satish
The price is SAR 635
SAR 838 total
includes taxes & fees
1 Nov - 2 Nov
The Dana on Mission Bay

2. San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay
8.6 out of 10, Excellent, (1,641 reviews)
"Beautiful resort! Would definitely stay there again!!"
United States
brittany
The price is SAR 897
SAR 1,230 total
includes taxes & fees
28 Oct - 29 Oct
San Diego Mission Bay Resort

3. Paradise Point Resort & Spa

Paradise Point Resort & Spa
4.0 star property
Mission Bay
8.8 out of 10, Excellent, (2,918 reviews)
"Great property and staff was wonderful"
Canada
Jesse
The price is SAR 779
SAR 1,095 total
includes taxes & fees
30 Oct - 31 Oct
Paradise Point Resort & Spa

4. Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
4.0 star property
Mission Bay
8.4 out of 10, Very good, (1,639 reviews)
"Perfect breakfast!"
United States
Farzam
The price is SAR 811
SAR 1,131 total
includes taxes & fees
1 Nov - 2 Nov
Hyatt Regency Mission Bay Spa and Marina

5. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
4.0 star property
2.8 km from Mission Bay
9.2 out of 10, Wonderful, (1,391 reviews)
"Very nice & very clean place to stay"
United States
Xuan
The price is SAR 551
SAR 633 total
includes taxes & fees
1 Nov - 2 Nov
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

6. Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

Best Western Inn & Suites San Diego – Zoo/SeaWorld Area
2.5 star property
3.6 km from Mission Bay
8.0 out of 10, Very good, (3,057 reviews)
"Good hotel"
United States
Steve
The price is SAR 515
SAR 591 total
includes taxes & fees
19 Oct - 20 Oct
Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

7. La Quinta Inn & Suites by Wyndham San Diego Mission Bay

La Quinta Inn & Suites by Wyndham San Diego Mission Bay
3.0 star property
North Pacific Beach, 3.5 km from Mission Bay
8.0 out of 10, Very good, (1,631 reviews)
"We only stayed one night but it was nice and easy"
United States
Lauren
The price is SAR 407
SAR 468 total
includes taxes & fees
7 Oct - 8 Oct
La Quinta Inn & Suites by Wyndham San Diego Mission Bay

8. Hilton Garden Inn San Diego Old Town/SeaWorld Area

Hilton Garden Inn San Diego Old Town/SeaWorld Area
3.0 star property
Old Town San Diego, 3.1 km from Mission Bay
8.8 out of 10, Excellent, (1,522 reviews)
"Overall amazing and would stay again"
United States
Nayibe
The price is SAR 396
SAR 455 total
includes taxes & fees
25 Oct - 26 Oct
Hilton Garden Inn San Diego Old Town/SeaWorld Area

9. Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.3 km from Mission Bay
8.8 out of 10, Excellent, (1,011 reviews)
"The room was clean and the staff was very nice."
United States
Patricia
The price is SAR 559
SAR 643 total
includes taxes & fees
12 Oct - 13 Oct
Holiday Inn Express San Diego - SeaWorld Area by IHG

10. Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area
3.0 star property
4.2 km from Mission Bay
8.8 out of 10, Excellent, (1,733 reviews)
"Clean room, very friendly staff, great breakfast."
United States
Edith
The price is SAR 613
SAR 704 total
includes taxes & fees
1 Nov - 2 Nov
Homewood Suites by Hilton San Diego Hotel Circle/SeaWorld Area

11. GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (2,399 reviews)
"Great stay"
United States
Denise
The price is SAR 413
SAR 475 total
includes taxes & fees
6 Oct - 7 Oct
GreenTree Inn San Diego Mission Bay

12. Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.6 km from Mission Bay
7.4 out of 10, Good, (4,194 reviews)
"Great place to stay!"
United States
Nayla
The price is SAR 393
SAR 452 total
includes taxes & fees
12 Oct - 13 Oct
Wyndham Garden San Diego Near SeaWorld

13. Comfort Inn San Diego - SeaWorld Area

Comfort Inn San Diego - SeaWorld Area
3.5 star property
2.8 km from Mission Bay
8.6 out of 10, Excellent, (4,186 reviews)
"Close to Seaworld, good breakfast."
United States
Yesenia
The price is SAR 409
SAR 470 total
includes taxes & fees
26 Oct - 27 Oct
Comfort Inn San Diego - SeaWorld Area

14. Old Town Inn

Old Town Inn
2.5 star property
3.5 km from Mission Bay
9.0 out of 10, Wonderful, (2,024 reviews)
"Have stayed here before and property is always clean and has good breakfast."
United States
Cindy
The price is SAR 581
SAR 666 total
includes taxes & fees
6 Oct - 7 Oct
Old Town Inn

15. Fairfield Inn & Suites San Diego Old Town

Fairfield Inn & Suites San Diego Old Town
3.0 star property
Old Town San Diego, 4.1 km from Mission Bay
8.8 out of 10, Excellent, (1,207 reviews)
"Good breakfast, nice public areas."
United States
Timothy
The price is SAR 520
SAR 598 total
includes taxes & fees
25 Oct - 26 Oct
Fairfield Inn & Suites San Diego Old Town

16. Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
5.6 km from Mission Bay
8.4 out of 10, Very good, (2,071 reviews)
"Nice room, convenient to the airport without the noise, extremely helpful staff."
United States
James
The price is SAR 428
SAR 491 total
includes taxes & fees
25 Oct - 26 Oct
Best Western Yacht Harbor Hotel

17. Best Western Plus Hacienda Hotel Old Town

Best Western Plus Hacienda Hotel Old Town
3.0 star property
Old Town San Diego, 3.7 km from Mission Bay
8.4 out of 10, Very good, (2,173 reviews)
"Great place, will stay here again if we have the opportunity."
Canada
Glenna
The price is SAR 537
SAR 618 total
includes taxes & fees
12 Oct - 13 Oct
Best Western Plus Hacienda Hotel Old Town

18. Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
5.3 km from Mission Bay
9.2 out of 10, Wonderful, (1,716 reviews)
"Clean rooms and friendly staff!"
United States
Ana Lopez
The price is SAR 643
SAR 740 total
includes taxes & fees
25 Oct - 26 Oct
Hampton Inn & Suites San Diego Airport Liberty Station

19. Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
4.8 km from Mission Bay
9.2 out of 10, Wonderful, (1,081 reviews)
"Love the hotel, the breakfast was good and the staff was exceptional."
United States
Patricia
The price is SAR 593
SAR 682 total
includes taxes & fees
27 Oct - 28 Oct
Holiday Inn Express San Diego Airport - Old Town by IHG

20. TownePlace Suites by Marriott San Diego Airport/Liberty Station

TownePlace Suites by Marriott San Diego Airport/Liberty Station
3.0 star property
5.2 km from Mission Bay
8.8 out of 10, Excellent, (1,004 reviews)
"Such a great place to stay"
United States
Chase
The price is SAR 660
SAR 759 total
includes taxes & fees
1 Nov - 2 Nov
TownePlace Suites by Marriott San Diego Airport/Liberty Station
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Where to stay in Mission Bay

Find the best Mission Bay areas and neighborhoods for the activities you enjoy most.

Downtown San Diego

Cultural and financial hub, Downtown San Diego boasts the Symphony, Opera, theaters, museums, and historic sites like Gaslamp Quarter. Enjoy diverse shops, dining, nightlife, and convenient public transport options.

Pacific Beach

Boasting a lively nightlife scene, Pacific Beach offers miles of sandy shores, a bustling 3.2-mile boardwalk, and attractions like Crystal Pier and Kate Sessions Park. Enjoy local shops, bars, and eateries along the vibrant walkway.

Mission Beach

Spanning nearly two miles of oceanfront, this sandbar community offers sunbathing, surfing, and beach volleyball, with nearby attractions like Belmont Park's Giant Dipper Roller Coaster and SeaWorld in Mission Bay Park.

Gaslamp Quarter

Downtown San Diego's historic district boasts Victorian-era buildings, now housing vibrant restaurants, shops, and entertainment venues. Stroll from Broadway to Harbor Drive, and 4th to 6th Avenue, admiring the newly installed gaslamps at Market Street.

Ocean Beach

Ocean Beach is known for its stunning beaches, and with sights like Ocean Beach and Dog Beach, you won't get bored spending a day wandering around this part of San Diego.

Top Mission Bay Hotel Reviews

Frequently asked questions

What is Mission Bay like?
You'll be sure to have fun visiting San Diego's Mission Bay neighborhood. Looking for sights you might find in a travel guide about Mission Bay? Consider a visit to Mission Bay while you're in the neighborhood.
What's a favorite hotel to stay in Mission Bay?
Based on our traveler data, Paradise Point Resort & Spa is one of the top choices for your stay in Mission Bay. This resort is a short 1-minute walk from Mission Bay, and it offers a marina and 5 outdoor pools. Other good options for your stay in the neighborhood include The Dana on Mission Bay and San Diego Mission Bay Resort.
How many hotels should I expect to find in Mission Bay?
If you're searching for places to stay in San Diego, Expedia has something to meet your needs with 37 Mission Bay hotels and other accommodations to choose from.
If I need to cancel my hotel reservation in Mission Bay, will I receive a refund?
Yes, you'll find most room reservations are refundable provided that you cancel prior to the accommodation's cancellation deadline, which is usually within 24-48 hours of your check-in date. If your reservation is non-refundable, you might be able to cancel it and be given a refund within a 24-hour period of your booking. Add your dates and click on "Search", then use the filter option "fully refundable" to view the best options available in Mission Bay.
Where can I learn more about changing or cancelling my trip to Mission Bay?
To find more details about updating your trip to Mission Bay or cancelling it, head over to our customer service page.
What is there to do around this San Diego neighborhood?
Enjoy a stroll along the shore at Ski Beach, Mission and Pacific Beaches, and Crown Point Shores while you're in Mission Bay. You could also plan a visit to Mission Bay or North Cove Beach while you're in the neighborhood. Don't miss favorite places to visit in the surrounding area, such as Mission Beach, Marine Corps Recruit Depot, and Hotel Circle. When you're sightseeing in San Diego, The Dana On Mission Bay, BW Premier Collection and Marina Village Conference Center are also worth a stop.